{"id":506,"date":"2014-12-29T05:33:56","date_gmt":"2014-12-29T05:33:56","guid":{"rendered":"http:\/\/blogs.rochester.edu\/larracuente\/?page_id=506"},"modified":"2025-05-28T15:32:27","modified_gmt":"2025-05-28T15:32:27","slug":"people-2","status":"publish","type":"page","link":"http:\/\/blogs.rochester.edu\/larracuente\/people-2\/","title":{"rendered":"People"},"content":{"rendered":"<p><a href=\"#PI\">PI<\/a>: Amanda Larracuente<br \/>\n<a href=\"#G\">Graduate Students<\/a>:\u00a0 \u00a0Emiliano Mart\u00ed, Logan Edvalson, Jabale Rahmat, Leila Lin<br \/>\n<a href=\"#RAT\">Research associates and technicians<\/a>: Danna Eickbush, Nick Fuda, Josiah Bowers<br \/>\n<a href=\"#UN\">Undergraduates<\/a>:\u00a0 \u00a0Adya Mohapatra, Tyler Handler, Artemis Shung, Gabrielle Nemer, Daniel Lee<br \/>\n<a href=\"http:\/\/blogs.rochester.edu\/larracuente\/people-2\/former-lab-members\/\">Former lab members<\/a><\/p>\n<figure id=\"attachment_7642\" aria-describedby=\"caption-attachment-7642\" style=\"width: 405px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2019\/02\/Larracuente.lab_.photo_.2019.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-7642\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2019\/02\/Larracuente.lab_.photo_.2019-300x135.jpg\" alt=\"\" width=\"405\" height=\"182\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2019\/02\/Larracuente.lab_.photo_.2019-300x135.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2019\/02\/Larracuente.lab_.photo_.2019-768x345.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2019\/02\/Larracuente.lab_.photo_.2019-1024x461.jpg 1024w\" sizes=\"auto, (max-width: 405px) 100vw, 405px\" \/><\/a><figcaption id=\"caption-attachment-7642\" class=\"wp-caption-text\">Larracuente lab- 2019<\/figcaption><\/figure>\n<figure id=\"attachment_9392\" aria-describedby=\"caption-attachment-9392\" style=\"width: 300px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-9392 size-medium\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-300x169.jpg\" alt=\"Larracuente lab 2020\" width=\"300\" height=\"169\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-300x169.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-1024x576.jpg 1024w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-768x432.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-1536x864.jpg 1536w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2021\/10\/lab.2020-2048x1152.jpg 2048w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><figcaption id=\"caption-attachment-9392\" class=\"wp-caption-text\">Larracuente lab 2020<\/figcaption><\/figure>\n<figure id=\"attachment_10662\" aria-describedby=\"caption-attachment-10662\" style=\"width: 300px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-scaled.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-10662 size-medium\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-300x225.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-1024x768.jpg 1024w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-768x576.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-1536x1152.jpg 1536w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Lab.2023-2048x1536.jpg 2048w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><figcaption id=\"caption-attachment-10662\" class=\"wp-caption-text\">Larracuente Lab 2023<\/figcaption><\/figure>\n<h1 style=\"text-align: left;\">Lab members:<\/h1>\n<p style=\"text-align: left;\"><span style=\"text-decoration: underline;\"><a name=\"PI\"><\/a><br \/>\n<strong>Amanda Larracuente, Ph.D. (PI, Nathaniel and Helen Wisch Professor of Biology)<\/strong><\/span><\/p>\n<p style=\"text-align: left;\">e-mail: alarracu@bio.rochester.edu<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-6172 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885-300x234.jpg\" alt=\"\" width=\"238\" height=\"186\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885-300x234.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885-768x599.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885-1024x798.jpg 1024w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/AML_scope2-e1491273935885.jpg 1807w\" sizes=\"auto, (max-width: 238px) 100vw, 238px\" \/><\/a><br \/>\nAmanda earned her Ph.D. studying Drosophila genomics and sex chromosome evolution in Dr. Andrew Clark&#8217;s lab at Cornell University. During her postdoctoral training, she focused on the evolution of selfish DNA including the <em>Segregation Distorter<\/em> system of <em>Drosophila melanogaster. <\/em>Amanda was the Stephen Biggar and Elisabeth Asaro Fellow in Data Science from 2017-2020. She became the Nathaniel and Helen Wisch Professor of Biology in 2024. Amanda is the Associate Chair of the Biology Department.<\/p>\n<p style=\"text-align: left;\">Other roles: Amanda is the advisor and track coordinator for the undergraduate major and minor in Computational Biology. She teaches the Applied Genomics capstone for comp bio majors. Amanda is also an active member of the Goergen Institute for Data Science where she advised majors and MS students and co-chairs the working group in Life and Biomedical Data Science.\u00a0 Outside of the University, she is on the editorial boards for Molecular Biology and Evolution and GENETICS and was on the Board of Directors for the Genetics Society of America.<\/p>\n<p>Selected publications from before starting the lab. Click <a href=\"http:\/\/blogs.rochester.edu\/larracuente\/?page_id=596\" target=\"_blank\" rel=\"noopener noreferrer\">here<\/a> for a full list of Amanda&#8217;s publications or see her <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/myncbi\/amanda.larracuente.1\/bibliography\/40318594\/public\/?sort=date&amp;direction=descending\" target=\"_blank\" rel=\"noopener noreferrer\">NCBI bibliography<\/a> and <a href=\"https:\/\/orcid.org\/0000-0001-5944-5686\">ORCID<\/a>.<\/p>\n<ul>\n<li>Larracuente, A.M. 2014. <a href=\"http:\/\/www.biomedcentral.com\/1471-2148\/14\/233\" target=\"_blank\" rel=\"noopener noreferrer\">The organization and evolution of the <em>Responder<\/em> satellite in species of the <em>Drosophila melanogaster<\/em> group: dynamic evolution of a target of meiotic drive<\/a>. BMC Evol. Biol.14:233. doi:10.1186\/s12862-014-0233-9<\/li>\n<li>Larracuente, A.M. and A.G. Clark. 2014. <a href=\"http:\/\/mbe.oxfordjournals.org\/content\/31\/4\/846\" target=\"_blank\" rel=\"noopener noreferrer\">Recent selection on the Y-to-dot translocation in<\/a> <em>Drosophila pseudoobscura<\/em>. Mol. Biol. Evol. 31(4):846-856. doi 10.1093\/molbev\/msu002.<\/li>\n<li>Larracuente, A.M. and A.G. Clark. 2013. <a href=\"http:\/\/www.genetics.org\/content\/193\/1\/201\" target=\"_blank\" rel=\"noopener noreferrer\">Surprising differences in the variability of Y chromosomes in African and Cosmopolitan populations of<\/a> <em>Drosophila melanogaster<\/em>. Genetics. 193:201-214.<\/li>\n<li>Larracuente, A.M. and D.C. Presgraves. 2012. <a href=\"http:\/\/www.genetics.org\/content\/192\/1\/33.long\" target=\"_blank\" rel=\"noopener noreferrer\">The selfish <em>Segregation Distorter<\/em> gene complex of <em>Drosophila melanogaster<\/em><\/a>. Genetics. 192: 1-21.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h1 style=\"text-align: center;\"><a name=\"G\"><\/a><em>Graduate students<\/em><\/h1>\n<p>&nbsp;<\/p>\n<p><span style=\"text-decoration: underline;\"><strong>Emiliano Mart\u00ed (E2G2 graduate student)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-9692 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2-300x234.jpg\" alt=\"\" width=\"174\" height=\"136\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2-300x234.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2-1024x800.jpg 1024w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2-768x600.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/01\/IMG_20200113_143006-2.jpg 1364w\" sizes=\"auto, (max-width: 174px) 100vw, 174px\" \/><\/a><\/strong><\/span><\/p>\n<p>Emiliano got his masters at the Sao Paulo State University studying the evolution of repetitive DNA in Schistocerca grasshoppers. He is interested in repetitive elements and their role in genome organization and sex chromosome evolution. Emiliano joined the Larracuente lab as an E2G2 graduate student, and is studying the organization of satellite DNA in populations. He is co-advised by Dr. Daven Presgraves.\u00a0 Learn more about Emiliano&#8217;s research on his website <a href=\"http:\/\/non-mendelian.com\" target=\"_blank\" rel=\"noopener\">http:\/\/non-mendelian.com<\/a>.<\/p>\n<p>Selected Publications:<\/p>\n<p>Mart\u00ed, E. and A.M. Larracuente. 2025. <a href=\"https:\/\/doi.org\/10.1016\/j.tig.2025.03.001\" target=\"_blank\" rel=\"noopener\">An innovation in host responses to escalating genomic conflicts<\/a>. Trends in Genetics. https:\/\/doi.org\/10.1016\/j.tig.2025.03.001.<\/p>\n<p>Mart\u00ed, E. and A.M. Larracuente. 2023. <a href=\"https:\/\/doi.org\/10.1098\/rspb.2023.1823\" target=\"_blank\" rel=\"noopener\">Genetic conflict and the origin of multigene families: implications for sex chromosome evolution<\/a>. Proc R. Soc. B. https:\/\/doi.org\/10.1098\/rspb.2023.1823.<\/p>\n<p>Mart\u00ed, E, Milani, D, Bardella, V.B. Albuquerque, L., Song, H.,Palacios-Gimenez,O.M. and D.C. Cabral-de-Mello. 2021. <a href=\"https:\/\/watermark.silverchair.com\/evolut2027.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAA2kwggNlBgkqhkiG9w0BBwagggNWMIIDUgIBADCCA0sGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMlDN0IVFGMFr5UfjnAgEQgIIDHE4-1Bg-lmruhc1zh0JDQC3JaZn1BNC6qgLM08ni5ZPPJgBN33OcUmsV5F2dqj9j8z3lYu24bXC4WqwtpU9aTaJWe192M9K61sWdqyzNt2GN6-xZpMQ4vl11KwaPAYmrO6-E1S7hYNl7Z9sy3XYcKOyluu_NRfT1LKImD0nFi_vuWr0QJlwidkTbhqkfeJDb9grfAEtRjuJrNmh8Na-e_uxFD4kGhYnzW1pw7ltJF05lwLMw-tDpCk7-4pFNtIzlN0JwV4TjVa97nQUZv6dZBmFV6Xpa3CoB4yj4WIyjFHhyEcGqFIiXa8_nki_tXkrFs1ieH7eiZRNSB3aJavBl5-qclp36ReGek-yHeehzj0hZyLVJgIJsE-voK7gMGUAiOQAThtnlMKtz4kwx5OmDfOL7cnd-m-aTCtV0-T0NBqoy6fqVm4xQ_YLn6QD975ULZrBpP_-Z4Xiu_2K-sL8A7cnfRGtqzqe3N6rx86I6LQZFffNFyJHy4md0fk82EWXwvTWcPKvRlMoAJttO_VfginIKIHNFdsYa-hAf6398nzcuFwE9s3Q7ngaDN2UQWMbMRjPp6sL_lF2Y-IPi9yuuqCMrD7ZiSsNUlMkHM2YVLW33sTP_4IpjBQUXfde1MbvNtCAcSaWpqaMxqibTSNP7hWFfMEt0muTnWinwPlMivu0HO0KospEkRnf_O2NbZzljaU75eXM7ich8-Vw-iBVeUTgJBzTXjSQV0FdCcxAkqqhORLLAbjN1BsbIhiTSz8FjTlGEJwh4_zws6ddbuu_xvYERdM-ZdKHpOuYTJKi_5br8QB55Ze13yEFNCRJ8DzV4kExGBIhWjffdISNBS3m-VZ9FEPtCEbJ1uwu9PKq3wOLFKobtrLiBGE2HFoCkcFl-xhUuopftR4ZnvBD3xlSlFie-ZWrArQ-BqI544P9L1038y1Fbz0vxOGrNy5OBWpm__va72Pz54Yf9cdChKvy2YjGtS8GnTMPeKMxdgHPPy3clo_q8-ucyvcUfC0rixNkJczad5N6whAwD5baX1ZnZRuwDhTCpZdzL0-68HXw\" target=\"_blank\" rel=\"noopener\">Cytogenomic analysis unveils mixed molecular evolution and recurrent chromosomal rearrangements shaping the multigene families on Schistocerca grasshopper genomes.<\/a> Evolution 75-8: 2027\u20132041. doi:10.1111\/evo.14287<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"text-decoration: underline;\"><strong>Logan Edvalson (CDM graduate student)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-scaled.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-10632 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-225x300.jpg\" alt=\"\" width=\"138\" height=\"184\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-225x300.jpg 225w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-768x1024.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-1152x1536.jpg 1152w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-1536x2048.jpg 1536w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2023\/06\/Logan.Edvalson-scaled.jpg 1920w\" sizes=\"auto, (max-width: 138px) 100vw, 138px\" \/><\/a><\/strong><\/span><\/p>\n<p>Logan completed his masters at Brigham Young University developing tools to study the evolutionary developmental genetics of reptiles. He is broadly interested in how genetic conflicts shape the evolution of the genome and how these conflicts influence chromatin architecture. Logan joined the Larracuente lab as a CDM graduate student in Spring 2023.<\/p>\n<p>Selected publications:<\/p>\n<p>Edvalson, L. T. and A.M. Larracuente. 2025. <a href=\"https:\/\/doi.org\/10.1093\/g3journal\/jkaf076\">Consequences of drive on the evolution of genomes and species.<\/a> G3: Genes|Genomes|Genetics DOI:10.1093\/g3journal\/jkaf076.<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"text-decoration: underline;\"><strong>Jabale Rahmat (E2G2 graduate student)<\/strong><\/span><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11512 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-225x300.jpg\" alt=\"\" width=\"143\" height=\"191\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-225x300.jpg 225w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-768x1024.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-1152x1536.jpg 1152w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-1536x2048.jpg 1536w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/JabaleRahmat-scaled.jpg 1920w\" sizes=\"auto, (max-width: 143px) 100vw, 143px\" \/><\/p>\n<p>Jabale completed his BS in Biochemistry from IndependentUniversity, Bangladesh and his MS in Biology from Miami University in Ohio, where he studied the underlying molecular mechanism of wing evolution in insects. Jabale loves to work with fruit flies! &#8220;They are such a beautiful model organism to work with. &#8221; Jabale is interested in chromosome biology, especially the role of repetitive elements in genomic conflicts, organization, and evolutionary dynamics.<\/p>\n<p><span style=\"text-decoration: underline;\"><strong>Leila Lin (E2G2 graduate student)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-11522 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy-300x300.jpg\" alt=\"\" width=\"178\" height=\"178\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy-300x300.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy-150x150.jpg 150w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy-768x768.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2025\/05\/Leila_and_Dumpy.jpg 895w\" sizes=\"auto, (max-width: 178px) 100vw, 178px\" \/><\/a><\/strong><\/span><\/p>\n<p>Leila completed her undergraduate studies at the University of California, Irvine, where she investigated signatures of positive selection in genes associated with heterochromatin function across Drosophila species and explored their relationship with repetitive genomic content. Broadly, she is interested in how repetitive elements contribute to genome organization and chromosome evolution. In Spring 2025, Leila joined the Larracuente Lab as an E2G2 student, where she plans to investigate chromosome domain organization.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<h1 style=\"text-align: center;\"><em>Research associates and technicians<\/em><br \/>\n<a name=\"RAT\"><\/a><\/h1>\n<p><strong><span style=\"text-decoration: underline;\">Danna Eickbush, Ph.D. (Research associate)<\/span><br \/>\n<\/strong><\/p>\n<p>e-mail: danna.eickbush@rochester.edu<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/flowers-e1421986658270.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-636 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/flowers-e1421986658270-300x274.jpg\" alt=\"flowers\" width=\"216\" height=\"197\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/flowers-e1421986658270-300x274.jpg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2014\/12\/flowers-e1421986658270-1024x934.jpg 1024w\" sizes=\"auto, (max-width: 216px) 100vw, 216px\" \/><\/a><br \/>\nDanna Eickbush attended the University of Arizona where she was introduced to the wonders of molecular biology and immediately transferred to the newly formed Department of Cellular and Development Biology. She then joined the Ph.D. program in Cellular and Development Biology at Harvard University, characterizing the molecular structure and transcriptional patterns of the 71C-E region of <em>Drosophila melanogaster<\/em> while in the lab of Dr. Peter Cherbas. After moving to upstate New York, she did a postdoc with Dr. Jack Werren studying the selfish B-chromosome Paternal Sex Ratio (PSR) in the wasp <em>Nasonia vitripennis<\/em>. For the last 25 years, she has worked as a research associate with Dr. Tom Eickbush at the University of Rochester. The long tenure with her husband allowed Danna to study many aspects of the life cycle of the retrotransposable element R2, including its regulation and transcription. Danna works on the regulation of satellite DNA expression in <em>Drosophila<\/em> species.<\/p>\n<p>Selected recent publications. Click <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=Danna+G.+Eickbush\" target=\"_blank\" rel=\"noopener noreferrer\">here<\/a> to see Danna&#8217;s PubMed list.<\/p>\n<ul>\n<li>Eickbush, T.H. and Eickbush, D.G. 2015. Integration, regulation, and long-term stability of R2 retrotransposons. In Mobile DNA III. ASMscience. Editor Nancy L. Craig (in Press).<\/li>\n<li>Eickbush, D.G., Burke, W.D. and Eickbush, T.H. 2013. <a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0066441\" target=\"_blank\" rel=\"noopener noreferrer\">Evolution of the R2 retrotransposon ribozyme and its self-cleavage site<\/a>. PLoS One 8: e66441.<\/li>\n<li>Eickbush, D.G. and Eickbush, T.H. 2012. <a href=\"http:\/\/www.mobilednajournal.com\/content\/3\/1\/10\" target=\"_blank\" rel=\"noopener noreferrer\">R2 and R2\/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements<\/a>. Mobile DNA 3: 10.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong><span style=\"text-decoration: underline;\">Nick Fuda, Ph.D. (Research associate)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/12\/Fuda_pic.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-10222 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/12\/Fuda_pic.jpg\" alt=\"\" width=\"200\" height=\"200\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/12\/Fuda_pic.jpg 250w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2022\/12\/Fuda_pic-150x150.jpg 150w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><\/a><\/span><\/strong><\/p>\n<p>e-mail: nfuda@UR.Rochester.edu Nick Fuda\u00a0 received his PhD from John Lis\u2019 lab at Cornell University in 2012. He investigated general mechanisms of RNA polymerase II transcription in <em>Drosophila melanogaster<\/em> with a particular interest in the mechanisms controlling promoter-proximal pausing. As a post-doc, he studied dosage compensation in <em>Caenorhabditis elegans<\/em> in Barbara Meyers\u2019 lab at University of California Berkeley, investigating how the dosage compensation machinery specifically localizes to the X chromosome and how RNA polymerase II transcription is being modulated to compensation X chromosome expression. Nick is now studying the molecular mechanisms of meiotic drive as a research associate in the lab.<\/p>\n<p>Selected Publications:<\/p>\n<p>Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT. <a href=\"https:\/\/doi.org\/10.1371\/journal.pgen.1005108\" target=\"_blank\" rel=\"noopener\">GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters<\/a>. PLoS Genet. 2015 Mar 27;11(3):e1005108. doi:10.1371\/journal.pgen.1005108<\/p>\n<p>Duarte FM, Fuda NJ, Mahat DB, Core LJ, Guertin MJ, Lis JT. <a href=\"http:\/\/genesdev.cshlp.org\/content\/30\/15\/1731\" target=\"_blank\" rel=\"noopener\">Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation<\/a>. Genes Dev. 2016 Aug 1;30(15):1731-46. doi: 10.1101\/gad.284430.116<\/p>\n<p>Nicholas J Fuda, Katju\u0161a Brejc, William S Kruesi, Edward J Ralston, Rachel Bigley, Aram Shin, Miki Okada, Barbara J Meyer <a href=\"https:\/\/www.pnas.org\/doi\/abs\/10.1073\/pnas.2211642119\" target=\"_blank\" rel=\"noopener\">Combinatorial clustering of distinct DNA motifs directs synergistic binding of Caenorhabditis elegans dosage compensation complex to X chromosomes.<\/a> Proc Natl Acad Sci USA 2022 Sep 13;119(37):e2211642119. doi: 10.1073\/pnas.2211642119<\/p>\n<p><strong><span style=\"text-decoration: underline;\">Josiah Bowers (Technician)<\/span><\/strong><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11012 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a-300x300.jpeg\" alt=\"\" width=\"222\" height=\"222\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a-300x300.jpeg 300w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a-1024x1024.jpeg 1024w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a-150x150.jpeg 150w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a-768x768.jpeg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/E1744EBF-0AB2-4950-B89A-00FAF1281A4A_1_201_a.jpeg 1170w\" sizes=\"auto, (max-width: 222px) 100vw, 222px\" \/><\/p>\n<p>Josiah received his BS in Biochemistry and Philosophy from St. John Fisher University. He is our lab fly wrangler and also contributes to our study of the mechanisms of <em>Segregation Distorter<\/em> in <em>Drosophila melanogaster<\/em>.<\/p>\n<p>&nbsp;<\/p>\n<h1><\/h1>\n<h1 style=\"text-align: center;\"><a name=\"UN\"><\/a><em>Undergraduates<\/em><\/h1>\n<p>&nbsp;<\/p>\n<p><strong>Adya Mohapatra (undergraduate, Molecular Genetics)<\/strong><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-11222 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/Profile-Picture-220x300.png\" alt=\"\" width=\"144\" height=\"196\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/Profile-Picture-220x300.png 220w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/Profile-Picture.png 280w\" sizes=\"auto, (max-width: 144px) 100vw, 144px\" \/><\/p>\n<p>Adya is an undergraduate majoring in\u00a0molecular genetics who is using CRISPR to delete satellite DNA<em>\u00a0<\/em>in\u00a0<em>Drosophila melanogaster<\/em><em>.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Tyler Handler (undergraduate, Molecular Genetics)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-scaled.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-10972 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-225x300.jpg\" alt=\"\" width=\"149\" height=\"199\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-225x300.jpg 225w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-768x1024.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-1152x1536.jpg 1152w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-1536x2048.jpg 1536w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_5562-scaled.jpg 1920w\" sizes=\"auto, (max-width: 149px) 100vw, 149px\" \/><\/a><\/strong><\/p>\n<p>Tyler is an undergraduate majoring in molecular genetics with a minor in computational biology.\u00a0 He is mapping a suppressor of <em>Segregation Distorter\u00a0<\/em>in\u00a0<em>Drosophila melanogaster.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Artemis Shung (undergraduate, Computational Biology)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/artemis.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11172 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/artemis-225x300.jpg\" alt=\"\" width=\"140\" height=\"187\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/artemis-225x300.jpg 225w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/artemis.jpg 458w\" sizes=\"auto, (max-width: 140px) 100vw, 140px\" \/><\/a><\/strong><\/p>\n<p>Artemis is an undergraduate majoring in computational biology. He is part of our team &#8220;Spermatogenomics&#8221; and is currently satellite DNA transcription in <em>D. melanogaster<\/em> testes.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Gabrielle Nemer (undergraduate, Computational Biology)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-11212 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869-254x300.jpg\" alt=\"\" width=\"144\" height=\"170\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869-254x300.jpg 254w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869-866x1024.jpg 866w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869-768x908.jpg 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869-1299x1536.jpg 1299w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/IMG_2196-scaled-e1731981464869.jpg 1608w\" sizes=\"auto, (max-width: 144px) 100vw, 144px\" \/><\/a><\/strong><\/p>\n<p>Gabby is an undergraduate majoring in computational biology. She is part of our team &#8220;Spermatogenomics&#8221; and is currently chromatin landscapes in <em>D. melanogaster<\/em> testes.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Daniel Lee (undergraduate, Computational Biology)<a href=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image.png\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-11202 alignright\" src=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image-230x300.png\" alt=\"\" width=\"125\" height=\"163\" srcset=\"https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image-230x300.png 230w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image-785x1024.png 785w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image-768x1002.png 768w, https:\/\/blogs.rochester.edu\/larracuente\/wp-content\/uploads\/2024\/11\/image.png 1104w\" sizes=\"auto, (max-width: 125px) 100vw, 125px\" \/><\/a><\/strong><\/p>\n<p>Daniel is an undergraduate majoring in computational biology. He is part of our team &#8220;Spermatogenomics&#8221; and is currently chromatin landscapes in <em>D. melanogaster<\/em> testes.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>PI: Amanda Larracuente Graduate Students:\u00a0 \u00a0Emiliano Mart\u00ed, Logan Edvalson, Jabale Rahmat, Leila Lin Research associates and technicians: Danna Eickbush, Nick Fuda, Josiah Bowers Undergraduates:\u00a0 \u00a0Adya Mohapatra, Tyler Handler, Artemis Shung, Gabrielle Nemer, Daniel Lee Former lab members Lab members: Amanda Larracuente, Ph.D. (PI, Nathaniel and Helen Wisch Professor of Biology) e-mail: alarracu@bio.rochester.edu Amanda earned her &hellip; <a href=\"http:\/\/blogs.rochester.edu\/larracuente\/people-2\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">People<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":26,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-506","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/pages\/506","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/users\/26"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/comments?post=506"}],"version-history":[{"count":199,"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/pages\/506\/revisions"}],"predecessor-version":[{"id":11622,"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/pages\/506\/revisions\/11622"}],"wp:attachment":[{"href":"https:\/\/blogs.rochester.edu\/larracuente\/wp-json\/wp\/v2\/media?parent=506"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}